van Panhuis WG, Cross A, Burke DS. Project Tycho 2.0: A repository to improve the integration and reuse of data for global population health. J Am Med Inform Assoc. 2018 Oct 15. doi:
10.1093/jamia/ocy123. [Epub ahead of print] PMID: 30321381
Jalal H, Buchanich JM, Roberts MS, Balmert LC, Zhang K, Burke DS. Changing dynamics of the drug overdose epidemic in the United States from 1979 through 2016. Science. 2018 Sep 21;361(6408). pii: eaau1184. doi: 10.1126/science.aau1184.PMIC:30237320.
Espana G, Grefenstette J, Perkins A, Torres C, Campo Carey A, Diaz H, de la Hoz F, Burke DS, van Panhuis WG. Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014-2016 outbreak in Colombia. Sci Rep. 2018 Aug 15;8(1):12201. doi:10.1038/x41598-018-30647-8. PMID:30111778; PMCID:PMC6093909.
Buchanich JM, Balmert LC, Williams KE, Burke DS. The effect of incomplete death certificates on estimates of unintentional opioid-related overdose deaths in the United States, 1999-2015. Public Health Rep. 2018 Jul/Aug;133(4):423-431. PMID:29945473 doi: 10.1177/0033354918774330.
Buchanich JM, Doerfler SM, Lann MF, Marsh GM, Burke DS. Improvement in racial disparities in years of life lost in the USA since 1990. PLoS One. 2018 Apr25;13(4):e0194308. PMID:29694402 doi:10.1371/journal.pone.0194308.
Nascimento EJM, Huleatt JW, Cordeiro MT, Castanha PMS, George JK, Grebe E, Welte A, Brown M, Burke DS, Marques ETA. Development of antibody biomarkers of long term and recent dengue virus infections. J Virol Methods, 2018 Jul;257:62-68. PMID:29684416. doi:10.1016/j.jviromet.2018.04.009.
Marques ETA, Burke DS. Tradition and innovation in development of a Zika vaccine. Lancet, 2018 Feb 10:391(10120):516-517. PMID:29217377. doi:10.1016/S0140-6736(17)33107-0.
Farrow DC, Brooks LC, Hyun S, Tibshirani RJ, Burke DS, Rosenfeld R. A human judgment approach to epidemiological forecasting. PLoS Comput Bio, 2017 Mar 10;13(3):e1005248. PMID:28282375. PMCID:PMC5345757. doi:10.1371/journal.pci.1005248.
Burke DS. Forecasting the opioid epidemic. Science. 2016 Nov 4;354(6312):529. PMID:27811241. doi:10.1126/science.aa12943.
Zimmerman RK, Nowalk MP, Chung J, Jackson ML, Jackson LA, Petrie JG, Monto AS, McLean HQ, Belongia EA, Gaglani M, Murthy K, Fry AM, Flannery B; U.S. Flu VE Investigators. 2014-2015 Influenza Vaccine Effectiveness in the United States by vaccine type. Clin Infect Dis. 2016 Dec 15;63(12):1564-1573. PMID:27702768. PMCID:PMC5146719. doi:10.1093/cid/ciw635.
Gearhart TL, Montelaro RC, Schurdak ME, Pilcher CD, Rinaldo CR, Kodadek T, Park Y, Islam K, Yurko R, Marques ET Jr, Burke DS. Selection of a potential diagnostic biomarker for HIV infection from a random library of non-biological synthetic peptoid oligomers. J Immunol Methods. 2016 Aug;435:85-89. PMID:27182050. PMCID:PMC4947968. doi:10.1016/j.jim.2016.05.001.
Buchanich JM, Balmert LC, Pringle JL, Williams KE, Burke DS, Marsh GM,. Patterns and trends in accidental poisoning death rates in the US, 1979-2014. Preventive Medicine. 2016 Apr 13. PMID:27085991. doi:10.1016/j.ypmed.2016.04.007.
Metcalf CJE, Farrar J, Cutts F, Basta N, Graham AL, Lessler J, Ferguson N, Burke D, Grenfell BT. Use of Serological surveys to generate key insights of the changing global landscape of infectious disease. Lancet. 2016 Aug 13:388(10045):728-30. doi:10.1016/S0140-6736(16)30164-7. Epub 2016 Apr 5. PMID:27059886
Balmert LC, Buchanich JM, Pringle JL, Williams KE, Burke DS, Marsh GM. Patterns and Trends in Accidental Poisoning Deaths: Pennsylvania's Experience 1979-2014. PLoS One. 2016;11(3):e0151655. doi:10.1371/journal.pone.0151655. PMID:26963396.
Dalziel BD, Bjørnstad ON, van Panhuis WG, Burke DS, Metcalf CJ, Grenfell BT. Persistent Chaos of Measles Epidemics in the Prevaccination United States Caused by a Small Change in Seasonal Transmission Patterns. PLoS Computational Biology. 2016 Feb;12(2):e1004655. doi:10.1371/journal.pcbi.1004655. PMID:26845437. PMCID:PMC4741526.
van Panhuis WG, Choisy M, Xiong X, Chok NS, Akarasewi P, Iamsirithaworn S, Lam SK, Chong CK, Lam FC, Phommasak B, Vongphrachanh P, Bouaphanh K, Rekol H, Hien NT, Thai PQ, Duong TN, Chuang JH, Liu YL, Ng LC, Shi Y, Tayag EA, Roque VG Jr, Lee Suy LL, Jarman RG, Gibbons RV, Velasco JM, Yoon IK, Burke DS, Cummings DA. Region-wide synchrony and traveling waves of dengue across eight countries in Southeast Asia. Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):13069-74. doi: 10.1073/pnas.1501375112. Epub 2015 Oct 5.2015 Oct 5. PMID:26438851
Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Ferguson N, Burke DS, Cummings DA.
Differential efficacy of dengue vaccine by immune status.
Lancet. 2015 May 2;385(9979):1726. doi: 10.1016/S0140-6736(15)60889-3. No abstract available. PMID:25943936
Farrow DC, Burke DS, Rosenfeld R.
Computational Characterization of Transient Strain-Transcending Immunity against Influenza A.
PLoS One. 2015 May 1;10(5):e0125047. doi: 10.1371/journal.pone.0125047. eCollection 2015.PMID:25933195
Ruberto I, Marques E, Burke DS, Van Panhuis WG.
The availability and consistency of dengue surveillance data provided online by the World Health Organization.
PLoS Negl Trop Dis. 2015 Apr 14;9(4):e0003511. doi: 10.1371/journal.pntd.0003511. eCollection 2015 Apr.PMID:25874804
van Panhuis WG, Paul P, Emerson C, Grefenstette J, Wilder R, Herbst AJ, Heymann D, Burke DS.
A systematic review of barriers to data sharing in public health.
BMC Public Health. 2014 Nov 5;14:1144. doi: 10.1186/1471-2458-14-1144.PMID:25377061
Lukens S, DePasse J, Rosenfeld R, Ghedin E, Mochan E, Brown ST, Grefenstette J, Burke DS, Swigon D, Clermont G.
A large-scale immuno-epidemiological simulation of influenza A epidemics.
BMC Public Health. 2014 Sep 29;14:1019. doi: 10.1186/1471-2458-14-1019.PMID:25266818
LeBreton M, Switzer WM, Djoko CF, Gillis A, Jia H, Sturgeon MM, Shankar A, Zheng H, Nkeunen G, Tamoufe U, Nana A, Le Doux Diffo J, Tafon B, Kiyang J, Schneider BS, Burke DS, Wolfe ND.
A gorilla reservoir for human T-lymphotropic virus type 4.
Emerg Microbes Infect. 2014 Jan;3(1):e7. doi: 10.1038/emi.2014.7. Epub 2014 Jan 22.PMID:26038495
van Panhuis WG, Grefenstette J, Jung SY, Chok NS, Cross A, Eng H, Lee BY, Zadorozhny V, Brown S, Cummings D, Burke DS.
Contagious diseases in the United States from 1888 to the present.
N Engl J Med. 2013 Nov 28;369(22):2152-8. doi: 10.1056/NEJMms1215400. No abstract available. PMID:24283231
Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Schwartz IB, Burke DS, Cummings DA.
Potential opportunities and perils of imperfect dengue vaccines.
Vaccine. 2014 Jan 16;32(4):514-20. doi: 10.1016/j.vaccine.2013.11.020. Epub 2013 Nov 19.PMID:24269318
Azman AS, Stark JH, Althouse BM, Vukotich CJ Jr, Stebbins S, Burke DS, Cummings DA.
Household transmission of influenza A and B in a school-based study of non-pharmaceutical interventions.
Epidemics. 2013 Dec;5(4):181-6. doi: 10.1016/j.epidem.2013.09.001. Epub 2013 Sep 26.PMID:24267874
Yonas MA, Burke JG, Brown ST, Borrebach JD, Garland R, Burke DS, Grefenstette JJ.
Dynamic simulation of crime perpetration and reporting to examine community intervention strategies.
Health Educ Behav. 2013 Oct;40(1 Suppl):87S-97S. doi: 10.1177/1090198113493090.PMID:24084404
Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Burke DS, Cummings DA.
Challenges in the interpretation of dengue vaccine trial results.
PLoS Negl Trop Dis. 2013 Aug 29;7(8):e2126. doi: 10.1371/journal.pntd.0002126. eCollection 2013. No abstract available. PMID:24009782
Gibbons RV, Nisalak A, Yoon IK, Tannitisupawong D, Rungsimunpaiboon K, Vaughn DW, Endy TP, Innis BL, Burke DS, Mammen MP Jr, Scott RM, Thomas SJ, Hoke CH Jr.
A model international partnership for community-based research on vaccine-preventable diseases: the Kamphaeng Phet-AFRIMS Virology Research Unit (KAVRU).
Vaccine. 2013 Sep 23;31(41):4487-500. doi: 10.1016/j.vaccine.2013.07.082. Epub 2013 Aug 8. Review.PMID:23933334
Burke DS, Grefenstette JJ.
Toward an integrated meta-model of public health dynamics for preparedness decision support.
Public Health Manag Pract. 2013 Sep-Oct;19 Suppl 2:S12-5. doi: 10.1097/PHH.0b013e31828a842f. No abstract available. PMID:23903387
Reich NG, Shrestha S, King AA, Rohani P, Lessler J, Kalayanarooj S, Yoon IK, Gibbons RV, Burke DS, Cummings DA.
Interactions between serotypes of dengue highlight epidemiological impact of cross-immunity.
J R Soc Interface. 2013 Jul 3;10(86):20130414. doi: 10.1098/rsif.2013.0414. Print 2013 Sep 6. PMID:23825116
Kumar S, Grefenstette JJ, Galloway D, Albert SM, Burke DS.
Policies to reduce influenza in the workplace: impact assessments using an agent-based model.
Am J Public Health. 2013 Aug;103(8):1406-11. doi: 10.2105/AJPH.2013.301269. Epub 2013 Jun 13.PMID:23763426
Toner ES, Adalja AA, Nuzzo JB, Inglesby TV, Henderson DA, Burke DS.
Assessment of serosurveys for H5N1.
Clin Infect Dis. 2013 May;56(9):1206-12. doi: 10.1093/cid/cit047. Epub 2013 Feb 5. PMID:23386633
Ma D, Jasinska A, Kristoff J, Grobler JP, Turner T, Jung Y, Schmitt C, Raehtz K, Feyertag F, Martinez Sosa N, Wijewardana V, Burke DS, Robertson DL, Tracy R, Pandrea I, Freimer N, Apetrei C; International Vervet Research Consortium.
SIVagm infection in wild African green monkeys from South Africa: epidemiology, natural history, and evolutionary considerations.
PLoS Pathog. 2013 Jan;9(1):e1003011. doi: 10.1371/journal.ppat.1003011. Epub 2013 Jan 17.PMID:23349627